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Statistics for Censored Environmental Data Using Minitab and R

Englisch · Fester Einband

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Informationen zum Autor DENNIS R. HELSEL, PHD, is owner and Principal Scientist of Practical Stats, where he designs and conducts training courses in environmental statistics for scientists. He has over thirty years of experience working with the U.S. Geological Survey and is the author of numerous published articles on nondetect data and statistical methods in the environmental sciences. Dr. Helsel is the recipient of the Distinguished Service Award from the U.S. Department of the Interior (2007) as well as the Distinguished Achievement Award from the American Statistical Association (2003). Klappentext Praise for the First Edition " . . . an excellent addition to an upper-level undergraduate course on environmental statistics, and . . . a 'must-have' desk reference for environmental practitioners dealing with censored datasets." -Vadose Zone Journal Statistics for Censored Environmental Data Using Minitab® and R, Second Edition introduces and explains methods for analyzing and interpreting censored data in the environmental sciences. Adapting survival analysis techniques from other fields, the book translates well-established methods from other disciplines into new solutions for environmental studies. This new edition applies methods of survival analysis, including methods for interval-censored data to the interpretation of low-level contaminants in environmental sciences and occupational health. Now incorporating the freely available R software as well as Minitab® into the discussed analyses, the book features newly developed and updated material including: A new chapter on multivariate methods for censored data Use of interval-censored methods for treating true nondetects as lower than and separate from values between the detection and quantitation limits ("remarked data") A section on summing data with nondetects A newly written introduction that discusses invasive data, showing why substitution methods fail Expanded coverage of graphical methods for censored data The author writes in a style that focuses on applications rather than derivations, with chapters organized by key objectives such as computing intervals, comparing groups, and correlation. Examples accompany each procedure, utilizing real-world data that can be analyzed using the Minitab® and R software macros available on the book's related website, and extensive references direct readers to authoritative literature from the environmental sciences. Statistics for Censored Environmental Data Using Minitab® and R, Second Edition is an excellent book for courses on environmental statistics at the upper-undergraduate and graduate levels. The book also serves as a valuable reference for??environmental professionals, biologists, and ecologists who focus on the water sciences, air quality, and soil science. Zusammenfassung This Second Edition solves a current dilemma that occurs across a wide spectrum of environmental science: how to correctly analyze and interpret censored data (data below detection limits). It adapts survival analysis methods and demonstrates their practical applications when studying trace chemicals in air, water, soils, and biota. Inhaltsverzeichnis Preface ix Acknowledgments xi Introduction to the First Edition: An Accident Waiting to Happen xiii Introduction to the Second Edition: Invasive Data xvii 1 Things People Do with Censored Data that Are Just Wrong 1 Why Not Substitute-Missing the Signals that Are Present in the Data 3 Why Not Substitute?-Finding Signals that Are Not There 8 So Why Not Substitute? 10 Other Common Misuses of Censored Data 10 2 Three Approaches for Censored Data 12 Approach 1: Nonparametric Methods after Censoring at the Highest Reporting Limit 13 Approach 2: Maximum Likelihood Estima...

Inhaltsverzeichnis

Preface ix
 
Acknowledgments xi
 
Introduction to the First Edition: An Accident Waiting To Happen xiii
 
Introduction to the Second Edition: Invasive Data xvii
 
1 Things People Do with Censored Data that Are Just Wrong 1
 
Why Not Substitute--Missing the Signals that Are Present in the Data 3
 
Why Not Substitute?--Finding Signals that Are Not There 8
 
So Why Not Substitute? 10
 
Other Common Misuses of Censored Data 10
 
2 Three Approaches for Censored Data 12
 
Approach 1: Nonparametric Methods after Censoring at the Highest Reporting Limit 13
 
Approach 2: Maximum Likelihood Estimation 14
 
Approach 3: Nonparametric Survival Analysis Methods 17
 
Application of Survival Analysis Methods to Environmental Data 17
 
Parallels to Uncensored Methods 21
 
3 Reporting Limits 22
 
Limits When the Standard Deviation is Considered Constant 23
 
Insider Censoring-Biasing Interpretations 29
 
Reporting the Machine Readings of all Measurements 33
 
Limits When the Standard Deviation Changes with Concentration 34
 
For Further Study 36
 
4 Reporting, Storing, and Using Censored Data 37
 
Reporting and Storing Censored Data 37
 
Using Interval-Censored Data 41
 
Exercises 42
 
5 Plotting Censored Data 44
 
Boxplots 44
 
Histograms 46
 
Empirical Distribution Function 47
 
Survival Function Plots 49
 
Probability Plot 52
 
X-Y Scatterplots 59
 
Exercises 61
 
6 Computing Summary Statistics and Totals 62
 
Nonparametric Methods after Censoring at the Highest Reporting Limit 62
 
Maximum Likelihood Estimation 64
 
The Nonparametric Kaplan-Meier and Turnbull Methods 70
 
ROS: A "Robust" Imputation Method 79
 
Methods in Excel 86
 
Handling Data with High Reporting Limits 86
 
A Review of Comparison Studies 87
 
Summing Data with Censored Observations 94
 
Exercises 98
 
7 Computing Interval Estimates 99
 
Parametric Intervals 100
 
Nonparametric Intervals 103
 
Intervals for Censored Data by Substitution 103
 
Intervals for Censored Data by Maximum Likelihood 104
 
Intervals for the Lognormal Distribution 112
 
Intervals Using "Robust" Parametric Methods 125
 
Nonparametric Intervals for Censored Data 126
 
Bootstrapped Intervals 136
 
For Further Study 140
 
Exercises 141
 
8 What Can be Done When All Data Are Below the Reporting Limit? 142
 
Point Estimates 143
 
Probability of Exceeding the Reporting Limit 144
 
Exceedance Probability for a Standard Higher than the Reporting Limit 148
 
Hypothesis Tests Between Groups 151
 
Summary 152
 
Exercises 152
 
9 Comparing Two Groups 153
 
Why Not Use Substitution? 154
 
Simple Nonparametric Methods After Censoring at the Highest Reporting Limit 156
 
Maximum Likelihood Estimation 161
 
Nonparametric Methods 167
 
Value of the Information in Censored Observations 178
 
Interval-Censored Score Tests: Testing Data that Include (DL to RL) Values 180
 
Paired Observations 183
 
Summary of Two-Sample Tests for Censored Data 192
 
Exercises 192
 
10 Comparing Three or More Groups 194
 
Substitution Does Not Work--Invasive Data 195
 
Nonparametric Methods after Censoring at the Highest Reporting Limit 196
 
Maximum Likelihood Estimation 199
 
Nonparametric Method--The Generalized Wilcoxon Tes

Bericht

"Helsel's book is an excellent resource forscientists and statisticians, as well as an effective textbook foradvanced undergraduate and graduate school students." ( Integrated Environmental Assessment and Management , 1 May2014)

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