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Informationen zum Autor Scott Markel is a Principal Software Architect at LION bioscience Inc., where he is responsible for providing architectural direction in the development of software for the life sciences, including the use and development of standards. He is a co-chair of the Life Sciences Research Domain Task Force of the Object Management Group, and also chairs the LSR's Architecture and Roadmap Working Group. Prior to working at LION, Scott worked at NetGenics, Johnson & Johnson Pharmaceutical Research & Development, and Sarnoff Corporation. He has a Ph.D. in mathematics from the University of Wisconsin-Madison. When Scott's not working or writing he enjoys spending time with his wife and kids, reading European history books, and just enjoying life in sunny San Diego. Darryl León is a Principal Scientific Architect at LION bioscience Inc., where he is responsible for providing scientific direction in the development of software for the life sciences. Prior to working at LION, Darryl worked at NetGenics, DoubleTwist, and Genset. He has taught at California Polytechnic State University, San Luis Obispo, and currently teaches a bioinformatics class at U.C. Santa Cruz Extension and U.C. San Diego Extension. He is also a member of the Bioinformatics Advisory Committee at U.C. San Diego Extension. Darryl has a Ph. D. in biochemistry from the University of California, San Diego and did his postdoctoral research at the University of California, Santa Cruz. Zusammenfassung Gene sequence data is the most abundant type of data available! and if you're interested in analyzing it! you'll find a wealth of computational methods and tools to help you. This is a resource for anyone who needs to know about the practical aspects and mechanics of sequence analysis. Inhaltsverzeichnis Preface Data Formats Chapter 1: FASTA Format Chapter 2: GenBank/EMBL/DDBJ Chapter 3: SWISS-PROT Chapter 4: Pfam Chapter 5: PROSITE Tools Chapter 6: Readseq Chapter 7: BLAST Chapter 8: BLAT Chapter 9: ClustalW Chapter 10: HMMER Chapter 11: MEME/MAST Chapter 12: EMBOSS Appendixes Nucleotide andAmino Acid Tables Genetic Codes Resources Future Plans Colophon ...
List of contents
Preface
Data Formats
Chapter 1: FASTA Format
Chapter 2: GenBank/EMBL/DDBJ
Chapter 3: SWISS-PROT
Chapter 4: Pfam
Chapter 5: PROSITE
Tools
Chapter 6: Readseq
Chapter 7: BLAST
Chapter 8: BLAT
Chapter 9: ClustalW
Chapter 10: HMMER
Chapter 11: MEME/MAST
Chapter 12: EMBOSS
Appendixes
Nucleotide andAmino Acid Tables
Genetic Codes
Resources
Future Plans
Colophon
About the author
Scott Markel is a Principal Software Architect at LION bioscience Inc., where he is responsible for providing architectural direction in the development of software for the life sciences, including the use and development of standards. He is a co-chair of the Life Sciences Research Domain Task Force of the Object Management Group, and also chairs the LSR's Architecture and Roadmap Working Group. Prior to working at LION, Scott worked at NetGenics, Johnson & Johnson Pharmaceutical Research & Development, and Sarnoff Corporation. He has a Ph.D. in mathematics from the University of Wisconsin-Madison. When Scott's not working or writing he enjoys spending time with his wife and kids, reading European history books, and just enjoying life in sunny San Diego.
Darryl LeÃ3n is a Principal Scientific Architect at LION bioscience Inc., where he is responsible for providing scientific direction in the development of software for the life sciences. Prior to working at LION, Darryl worked at NetGenics, DoubleTwist, and Genset. He has taught at California Polytechnic State University, San Luis Obispo, and currently teaches a bioinformatics class at U.C. Santa Cruz Extension and U.C. San Diego Extension. He is also a member of the Bioinformatics Advisory Committee at U.C. San Diego Extension. Darryl has a Ph. D. in biochemistry from the University of California, San Diego and did his postdoctoral research at the University of California, Santa Cruz.
